Glyma20g23000 - SoyBase

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Report for Sequence Feature Glyma20g23000

Feature Type:	gene_model
Chromosome:	Gm20
Start:	32934427
stop:	32936842
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma20g23000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G56423	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr1:21129075-21130558 FORWARD LENGTH=270	SoyBase	E_val: 6.00E-110	ISS
UniRef100_I1NEZ6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NEZ6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma20g23000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma20g23000

Paralog	Evidence	Comments
Glyma10g28830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma20g23000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.20g097600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma20g23000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma20g23000

Limit To All Plant Sequences

>Glyma20g23000.2   sequence type=transcript   gene model=Glyma20g23000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGTCTACAATGGTTTTGGTTTGGCCCACTGATTCTTGATTGGTTGGTTCCTTCCTTTTAGACGGTTGGTTTTGTTCTGAAGTTCTGGGTATTGTAGTCAACGGTCAATGTCATCGCCGTGAAGAGGCCGCGGAGAAGGCACGGTTAAGGCTAAGACTCTTCCCTCTCTTTGGACCATTCAAATTGGCTGCTATACACGATAGTTTCTTATGATCTAGACTCTAGGCTTAGTTAGGCTTTTCTGTTATCGCCATGGATTTCGAGAGTAGAAGGCTTCATTTGCTCATCTCCGTTGTTGCCATCGTTGCTCTTAGCTTCACAGGAGTATCGTTGATGAATTTGGATATCCCGTTGAGGTAGGGTAGGATTTATTGGAGAAAAACAACTATGACTGGTTGTATAGTCCAAGAAACAACGGATTGATTGAGGGGAAGTTTTCTTCTTTCTTTCTTTCTTTCTTTTAGTAGCATGAATTCTAATGATTGCCTTGGACCTTTTGTGCTTATATGTTTTTCTTCTTGTGTGGCCATTACTCATTAGCAAAACAAATAAACTAACTTCTGGTTTTTCTATAAAAGAAATAACTTTTTTATTTGAATAAACCCTCAATTTCATCCTTCAAATATGACCCTCTCGGCAATTGTCCCTGAAGTAAAATTATACAAGTAATTTCTCAAGTATTAGAAATCATGCTAAGTAATCCCTCAAAAATTGAAAAGAATCTTCAAATTAGTCCCTGAACATCAGTAAAATATATTAAATTAGGAACTAAATTGACGGATATTCAATACTTGAAAGATAATTTATATAGTTTTATTACTTTAGGACTACTTAAGAGAGAGGGTAATATTTAGGGGACCAAATTGATGGTTTATTGCTTTTCATTTCTTACCTTACATTGTCATATTTGACTGTTGAAAATCTCAAAATTACCCTGTTTGGTAATTCAAGTGTCTGTTTATGCTCATGTAAGTTGCTTCTTTCAGCTGAAAAATGCAGGGAACTTGTTGGGGAGGAGGGGTCATCTCAGAGTGGAAAGTTTACGATCTTAAATTGCTTCGATATGGGTTCTGGAACTGTAGCATGTGCTGTCAAGGAAGGTGTGAAGCTCTATTTTTACAATATTAGGTCTTCTCATGCTGAAAGAGCAAGGAGCCAAGCAATTGAGTCTGCCCTTGTTGATGCTGTTGCTCAGGGGATGTCCCCAACGGATTCGGCAAAACATGCTCAGAAAGAAGGTAAGAAGGCAGCAAAATTGGCTTCCCGTCAAGCCAAGCGGATTATAGGTCCCATCATTTCTTCTGGATGGGACTTTTTTGAGGCTATTTACTATGGTGGTACTGTCACAGAAGGGTTCCTTAGAGGCACTGGTACTTTGTTTGGTACTTATGCTGGAGGATTCCTTGGGGAGCAAAGGCTTGGTAGAATTGGCTATCTTGTTGGAAGTCATCTGGGCAGTTGGGTTGGTGGTAGAATAGGATTAATGGTTTATGATGTGGTTAATGGAGTGCATTTGTTGTTGCAATTTGTTCAGACAGCAGAAACTGAAGTTCGCGAAAAATCCGAACGATCTGAAAGTTCCTTTTTTGGTGAAACTCCTGTTTATGACGGCTCTGAAGGCTCCAGTGTTTATGAATCACCTCTCGATGAAGAATCGTATGCCTATAAATCTACTGAACGTCAGAGCTATGAAACATATGAAGATTCTGAACTGTGATGAAAATCTAAAGTTCGTATATTGATAAAATTTCAGGCAGCTCCGAGGGCCTTTAGTGTTGACAAAATCATCTCCCAGCGAAGAATCCAATGCTTATATTCTAGTGAACCTCAGAGCCATGTAACATATGAAGATTCTAAACAGATGAAAATTTGAAGTTCATATATTGGTACGTGCTCAAATTTTAGGTCGATTATTAGTGTTTTTCTTCGATGTCTTTGTTTCAATATAGTAGGGATTGCTAACCTCTGGAGACTTTAGAAGTGCTCCACCTCTTGTAATTGGCGAATATAGAAGGTCCTAACAATTATGCTATTGCTCAATGTATCTGTTGCAATACTATTGCTTAACCGGTCGGATTCAAGGGGGGAAAAAAGTCACAAAGAGAAGTTGATCGAAACTATAATGATAATGGTTTTCAGTAGGCTTGAAGCATTGAAATTTTGGAAGCTATCCGTATCCTTCATCTTTAGCAAAA

Coding sequences of Glyma20g23000

Limit To All Plant Sequences

>Glyma20g23000.1   sequence type=CDS   gene model=Glyma20g23000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTTCGAGAGTAGAAGGCTTCATTTGCTCATCTCCGTTGTTGCCATCGTTGCTCTTAGCTTCACAGCTGAAAAATGCAGGGAACTTGTTGGGGAGGAGGGGTCATCTCAGAGTGGAAAGTTTACGATCTTAAATTGCTTCGATATGGGTTCTGGAACTGTAGCATGTGCTGTCAAGGAAGGTGTGAAGCTCTATTTTTACAATATTAGGTCTTCTCATGCTGAAAGAGCAAGGAGCCAAGCAATTGAGTCTGCCCTTGTTGATGCTGTTGCTCAGGGGATGTCCCCAACGGATTCGGCAAAACATGCTCAGAAAGAAGGTAAGAAGGCAGCAAAATTGGCTTCCCGTCAAGCCAAGCGGATTATAGGTCCCATCATTTCTTCTGGATGGGACTTTTTTGAGGCTATTTACTATGGTGGTACTGTCACAGAAGGGTTCCTTAGAGGCACTGGTACTTTGTTTGGTACTTATGCTGGAGGATTCCTTGGGGAGCAAAGGCTTGGTAGAATTGGCTATCTTGTTGGAAGTCATCTGGGCAGTTGGGTTGGTGGTAGAATAGGATTAATGGTTTATGATGTGGTTAATGGAGTGCATTTGTTGTTGCAATTTGTTCAGACAGCAGAAACTGAAGTTCGCGAAAAATCCGAACGATCTGAAAGTTCCTTTTTTGGTGAAACTCCTGTTTATGACGGCTCTGAAGGCTCCAGTGTTTATGAATCACCTCTCGATGAAGAATCGTATGCCTATAAATCTACTGAACGTCAGAGCTATGAAACATATGAAGATTCTGAACTGTGA

>Glyma20g23000.2   sequence type=CDS   gene model=Glyma20g23000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTGGAACTGTAGCATGTGCTGTCAAGGAAGGTGTGAAGCTCTATTTTTACAATATTAGGTCTTCTCATGCTGAAAGAGCAAGGAGCCAAGCAATTGAGTCTGCCCTTGTTGATGCTGTTGCTCAGGGGATGTCCCCAACGGATTCGGCAAAACATGCTCAGAAAGAAGGTAAGAAGGCAGCAAAATTGGCTTCCCGTCAAGCCAAGCGGATTATAGGTCCCATCATTTCTTCTGGATGGGACTTTTTTGAGGCTATTTACTATGGTGGTACTGTCACAGAAGGGTTCCTTAGAGGCACTGGTACTTTGTTTGGTACTTATGCTGGAGGATTCCTTGGGGAGCAAAGGCTTGGTAGAATTGGCTATCTTGTTGGAAGTCATCTGGGCAGTTGGGTTGGTGGTAGAATAGGATTAATGGTTTATGATGTGGTTAATGGAGTGCATTTGTTGTTGCAATTTGTTCAGACAGCAGAAACTGAAGTTCGCGAAAAATCCGAACGATCTGAAAGTTCCTTTTTTGGTGAAACTCCTGTTTATGACGGCTCTGAAGGCTCCAGTGTTTATGAATCACCTCTCGATGAAGAATCGTATGCCTATAAATCTACTGAACGTCAGAGCTATGAAACATATGAAGATTCTGAACTGTGA

Predicted protein sequences of Glyma20g23000

Limit To All Plant Sequences

>Glyma20g23000.1   sequence type=predicted peptide   gene model=Glyma20g23000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFESRRLHLLISVVAIVALSFTAEKCRELVGEEGSSQSGKFTILNCFDMGSGTVACAVKEGVKLYFYNIRSSHAERARSQAIESALVDAVAQGMSPTDSAKHAQKEGKKAAKLASRQAKRIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGTYAGGFLGEQRLGRIGYLVGSHLGSWVGGRIGLMVYDVVNGVHLLLQFVQTAETEVREKSERSESSFFGETPVYDGSEGSSVYESPLDEESYAYKSTERQSYETYEDSEL*

>Glyma20g23000.2   sequence type=predicted peptide   gene model=Glyma20g23000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSGTVACAVKEGVKLYFYNIRSSHAERARSQAIESALVDAVAQGMSPTDSAKHAQKEGKKAAKLASRQAKRIIGPIISSGWDFFEAIYYGGTVTEGFLRGTGTLFGTYAGGFLGEQRLGRIGYLVGSHLGSWVGGRIGLMVYDVVNGVHLLLQFVQTAETEVREKSERSESSFFGETPVYDGSEGSSVYESPLDEESYAYKSTERQSYETYEDSEL*

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